Mir-30-P1d2

MirGeneDB ID

Xla-Mir-30-P1d2

Family name

MIR-30 (all species)

Seed

UUUCAGU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Tgu-Mir-30-P1d Tni-Mir-30-P1d Xtr-Mir-30-P1d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 72107120-72107183 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUGGUGUUAGAUGGGCAGUUACAGCCUCUGUAAACAUCCUUGACUGGAAGCUGUGUAAUAAUGUAAGUAGCUUUCAGUCGGAUAUUUACAGCUGCUGGCUGCUACAGUCCUCCUUUUACAAG

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Structure

        10            20        30        40        50        60  
GAAUGGUGUUAGAUGGG----|   UA    CU       C    UU           GUGUAAU 
                     CAGU  CAGC  CUGUAAA AUCC  GACUGGAAGCU       A
                     GUCG  GUCG  GACAUUU UAGG  CUGACUUUCGA       A
GAACAUUUUCCUCCUGACAUC^   --    UC       A    --           UGAAUGU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-30-P1d2_5p*

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

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Mature sequence

Xla-Mir-30-P1d2_3p

mirBase accession

None

Sequence

42- CUUUCAGUCGGAUAUUUACAGC -64

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