Mir-30-P1d

MirGeneDB ID

Neu-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-30-P1a Neu-Mir-30-P2a Neu-Mir-30-P2b Neu-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051817.1: 78445982-78446045 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCAGCUCUCUCUGGGCAGUCUGUGCCGCUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUUGGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGGCAUCCCGGCCACAA

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Structure

        10            20        30        40        50        60  
UCCCAGCUCUCUCUGGG----|     GU                UU           GUAAGGU 
                     CAGUCU  GCCGCUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CGGCGACAUUUGUAGG  CUGACUUUCGA       C
AACACCGGCCCUACGGACACC^     --                --           GGAGGUU 
  120       110       100          90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-30-P1d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Neu-Mir-30-P1d_3p*

mirBase accession

None

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

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