Mir-30-P1d

MirGeneDB ID

Tgu-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-30a

Paralogues

Tgu-Mir-30-P1a Tgu-Mir-30-P1b Tgu-Mir-30-P2a Tgu-Mir-30-P2b Tgu-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

23: 2003629-2003691 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUGUAUCUUUUGGGGCAGUCAGUGCCUCUGUAAACAUCCUUGACUGGAAGCUGGAAGGGCUGGAAGGAGCUUUCAGUCGGAUGUUUACAGCAGCAGGCUGCUGCUCUCAGCUCAGCAUUUU

Get precursor sequence

Structure

        10         20          30        40        50        60  
UUUUGUAUCUUUUGGGG-   U    --| CU            UU           GGAAGGG 
                  CAG CAGU  GC  CUGUAAACAUCC  GACUGGAAGCU       \
                  GUC GUCG  CG  GACAUUUGUAGG  CUGACUUUCGA       C
UUUUACGACUCGACUCUC   -    GA^ AC            --           GGAAGGU 
 120       110        100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-30-P1d_5p

mirBase accession

MIMAT0014637

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Tgu-Mir-30-P1d_3p*

mirBase accession

MIMAT0014535

Sequence

41- CUUUCAGUCGGAUGUUUACAGC -63

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