MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-30-P1a  Tgu-Mir-30-P1b  Tgu-Mir-30-P1d  Tgu-Mir-30-P2a  Tgu-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 23: 2005755-2005815 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGGGGGAAUGUCCCAUGUUGUAGCACGUGUAAACAUCCUACACUCUCAGCUGUGAACUCGAGGUGGCUGGGAGAGGAUUGUUUACGCCUUCUGCCAUGGAGUGAACGCCUGGGAGCUG
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Structure
        10            20        30         40        50        60 
GGAAGGGGGAAUGUCCC----|  UU    CAC         -    ACA         GUGAAC 
                     AUG  GUAG   GUGUAAACA UCCU   CUCUCAGCU      \
                     UAC  CGUC   CGCAUUUGU AGGA   GAGGGUCGG      U
GUCGAGGGUCCGCAAGUGAGG^  --    UUC         U    ---         UGGAGC 
 .       110       100          90        80           70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-30-P2d_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Tgu-Mir-30-P2d_3p*
mirBase accessionNone
Sequence 
39- CUGGGAGAGGAUUGUUUACGCC -61
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