MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-30-P1a  Gja-Mir-30-P1b  Gja-Mir-30-P1d  Gja-Mir-30-P2a  Gja-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174883.1: 334623-334683 [-]
Precursor
(pre-Mir +30nt flank)
CAGACCCAGCAUUUCCCAUGCAGCAGCACGUGUAAACAUCCUACACUCUCAGCUGUGACUUUGCGGUGGCUGGGAGAAGGUUGUUUACGCCUUCUGCCAUGGACUGACCAUCCUGAAAACU
Get precursor sequence
Structure
        10        20          30        40        50        60 
CAGACCCAGCAUUUCCCAUGCA--|   CAC         U   ACA         GUGACU 
                        GCAG   GUGUAAACA CCU   CUCUCAGCU      \
                        CGUC   CGCAUUUGU GGA   GAGGGUCGG      U
UCAAAAGUCCUACCAGUCAGGUAC^   UUC         U   A--         UGGCGU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Gja-Mir-30-P2d_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Star sequence

Gja-Mir-30-P2d_3p* (predicted)
mirBase accessionNone
Sequence 
39- CUGGGAGAAGGUUGUUUACGCC -61
Get sequence