Mir-30-P2d

MirGeneDB ID

Aca-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

Paralogues

Aca-Mir-30-P1a Aca-Mir-30-P1b Aca-Mir-30-P1d Aca-Mir-30-P2a Aca-Mir-30-P2b

Orthologues

Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL343308.1: 254254-254314 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGAUACAUCAAUUCACAUGUAGCAGCGCAUGUAAACAUCCUACACUCUCAGCUGUGAAUUUGUGGUGGCUGGGAGAAGGUUGUUUACACCUUCUGCCAUGGACUAUCACCCAAACACAAC

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Structure

        10        20          30        40        50        60 
CCGAUACAUCAAUUCACAUGUA--|   CGCA        U   ACA         GUGAAU 
                        GCAG    UGUAAACA CCU   CUCUCAGCU      \
                        CGUC    ACAUUUGU GGA   GAGGGUCGG      U
CAACACAAACCCACUAUCAGGUAC^   UUCC        U   A--         UGGUGU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-30-P2d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Aca-Mir-30-P2d_3p*

mirBase accession

None

Sequence

39- CUGGGAGAAGGUUGUUUACACC -61

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