Mir-30-P1a

MirGeneDB ID

Aca-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-30d

Paralogues

Aca-Mir-30-P1b Aca-Mir-30-P1d Aca-Mir-30-P2a Aca-Mir-30-P2b Aca-Mir-30-P2d

Orthologues

Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

4: 1751122-1751178 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a 4: 1747987-1748046 [-] UCSC Ensembl
Mir-30-P1a 4: 1751122-1751178 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUUUCCCAGAUGCACAGUAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAAUUUCAGCUUUCAGUCAGAUGUUUGCUGCCACCGGCUAUUCAUAAACAACGCUGGAAGA

Get precursor sequence

Structure

        10          20        30        40        50         
UUCUUUCCCAGAUGCAC--|      U  U  U         CCC           GUAA 
                   AGUAGUC GU GU GUAAACAUC   GACUGGAAGCU    \
                   UUAUCGG CA CG CGUUUGUAG   CUGACUUUCGA    A
AGAAGGUCGCAACAAAUAC^      C  C  U         A--           CUUU 
     110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-30-P1a_5p

mirBase accession

MIMAT0021926

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

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Star sequence

Aca-Mir-30-P1a_3p*

mirBase accession

MIMAT0021927

Sequence

35- CUUUCAGUCAGAUGUUUGCUGC -57

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