MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-30-P1b  Lch-Mir-30-P1d  Lch-Mir-30-P2a  Lch-Mir-30-P2b  Lch-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH131061.1: 46578-46640 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCACGACCCGGCCCUGUUGUAGUCUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUAAAUCAUGACGACAGCUUUCAGUCAGAUGUUUGCUGUUGCCGGCUGCCUGAGUCCAUCGCCUGCAUU
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Structure
        10          20        30        40        50        60  
CCACGACCCGGCCCUGUU--|     U  U  U         CCC           GUAAAUC 
                    GUAGUC GU GC GUAAACAUC   GACUGGAAGCU       \
                    CGUCGG CG UG CGUUUGUAG   CUGACUUUCGA       A
UUACGUCCGCUACCUGAGUC^     C  U  U         A--           CAGCAGU 
 120       110       100        90          80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-30-P1a_5p (predicted)

mirBase accessionNone
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Lch-Mir-30-P1a_3p* (predicted)

mirBase accessionNone
Sequence
41- CUUUCAGUCAGAUGUUUGCUGU -63
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