Mir-30-P1a

MirGeneDB ID

Bta-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-30d

Paralogues

Bta-Mir-30-P1b Bta-Mir-30-P1d Bta-Mir-30-P2a Bta-Mir-30-P2b Bta-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037341.1: 7041143-7041204 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P1a NC_037341.1: 7041143-7041204 [+] UCSC Ensembl
Mir-30-P2a NC_037341.1: 7045583-7045642 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCUGUUAACUUGUGCAGAAGGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUACCACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAUUCGCAGACGUCAUUUCAGUG

Get precursor sequence

Structure

        10         20         30        40        50        60 
CUCUGUUAACUUGUGCA-   -|   U  U  U         CCC           GUACCA 
                  GAA GGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
GUGACUUUACUGCAGACG   A^   C  U  U         A--           AUCGAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-30-P1a_5p

mirBase accession

MIMAT0003533

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-30d

Star sequence

Bta-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

Get sequence