MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-30d
Paralogues Mmu-Mir-30-P1b  Mmu-Mir-30-P1d  Mmu-Mir-30-P2a  Mmu-Mir-30-P2b  Mmu-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr15: 68341217-68341278 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P2a chr15: 68337431-68337490 [-] UCSC Ensembl
Mir-30-P1a chr15: 68341217-68341278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUAGCUUGCUGUCAGAAAGUCUGUGUCUGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACUGGCUCUUCGAAUGCAUCUUUUGGACA
Get precursor sequence
Structure
        10         20         30        40        50        60 
UUUGUAGCUUGCUGUCA-   -|   U   UCU         CCC           GUAAGC 
                  GAA AGUC GUG   GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CAU   CGUUUGUAG   CUGACUUUCGA      A
ACAGGUUUUCUACGUAAG   C^   U   CGU         A--           ACCGAC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-30-P1a_5p

mirBase accessionMIMAT0000515
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000515
TargetScanVert: mmu-miR-30d-5p
miRDB: MIMAT0000515
Star sequence

Mmu-Mir-30-P1a_3p*

mirBase accessionMIMAT0017011
Sequence
40- CUUUCAGUCAGAUGUUUGCUGC -62
Get sequence
Proposed targets TargetScanVert: mmu-miR-30d-3p
miRDB: MIMAT0017011