Mir-30-P1a

MirGeneDB ID

Mmu-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-30d

Paralogues

Mmu-Mir-30-P1b Mmu-Mir-30-P1d Mmu-Mir-30-P2a Mmu-Mir-30-P2b Mmu-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mun-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr15: 68341217-68341278 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a chr15: 68337431-68337490 [-] UCSC Ensembl
Mir-30-P1a chr15: 68341217-68341278 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGUAGCUUGCUGUCAGAAAGUCUGUGUCUGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACUGGCUCUUCGAAUGCAUCUUUUGGACA

Get precursor sequence

Structure

        10         20         30        40        50        60 
UUUGUAGCUUGCUGUCA-   -|   U   UCU         CCC           GUAAGC 
                  GAA AGUC GUG   GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CAU   CGUUUGUAG   CUGACUUUCGA      A
ACAGGUUUUCUACGUAAG   C^   U   CGU         A--           ACCGAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-30-P1a_5p

mirBase accession

MIMAT0000515

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000515
TargetScanVert: mmu-miR-30d-5p
miRDB: MIMAT0000515

Star sequence

Mmu-Mir-30-P1a_3p*

mirBase accession

MIMAT0017011

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-30d-3p
miRDB: MIMAT0017011