Mir-30-P1a2

MirGeneDB ID

Xla-Mir-30-P1a2

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xtr-Mir-30-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030735.1: 121517227-121517289 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAACGAAAAACCGGUUUUGUAGUUUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUGAGGCUGCAUUUUAGCUUUCAGUCUGAUGUUUGCUGCUUCCGGCUGCACACAACUCUUCCCUCGCAG

Get precursor sequence

Structure

        10          20        30        40        50        60  
AAACGAAAAACCGGUUU--|      UGUU  U         CCC           GUGAGGC 
                   UGUAGUU    GC GUAAACAUC   GACUGGAAGCU       \
                   ACGUCGG    CG CGUUUGUAG   CUGACUUUCGA       U
GACGCUCCCUUCUCAACAC^      CCUU  U         U--           UUUUACG 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-30-P1a2_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Xla-Mir-30-P1a2_3p*

mirBase accession

None

Sequence

41- CUUUCAGUCUGAUGUUUGCUGC -63

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