Mir-30-P1a2

MirGeneDB ID

Xla-Mir-30-P1a2

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xtr-Mir-30-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030735.1: 121517227-121517289 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAACGAAAAACCGGUUUUGUAGUUUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUGAGGCUGCAUUUUAGCUUUCAGUCUGAUGUUUGCUGCUUCCGGCUGCACACAACUCUUCCCUCGCAG

Get precursor sequence

Structure

        10          20        30        40        50        60  
AAACGAAAAACCGGUUU--|      UGUU  U         CCC           GUGAGGC 
                   UGUAGUU    GC GUAAACAUC   GACUGGAAGCU       \
                   ACGUCGG    CG CGUUUGUAG   CUGACUUUCGA       U
GACGCUCCCUUCUCAACAC^      CCUU  U         U--           UUUUACG 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-30-P1a2_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Xla-Mir-30-P1a2_3p*

mirBase accession

None

Sequence

41- CUUUCAGUCUGAUGUUUGCUGC -63

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