Mir-30-P1b2

MirGeneDB ID

Xla-Mir-30-P1b2

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-30a

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xtr-Mir-30-P1b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030733.1: 74416880-74416941 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCUAGAAACUGCUGCUGACAGUGUGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAACAGUUGAAGGGCUUUCAGUCAGAUGUUUGCAGCUGCCAACUGCCUUCAUCUUCAAGAACUUCU

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Structure

        10          20        30        40        50        60 
GGCUAGAAACUGCUGCUGA--|   GU   A           CUC           GUGAAC 
                     CAGU  GCG CUGUAAACAUC   GACUGGAAGCU      A
                     GUCA  CGU GACGUUUGUAG   CUGACUUUCGG      G
UCUUCAAGAACUUCUACUUCC^   AC   C           A--           GAAGUU 
120       110       100        90        80          70

Deep sequencing

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-30-P1b2_5p

mirBase accession

MIMAT0046568

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

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Star sequence

Xla-Mir-30-P1b2_3p*

mirBase accession

MIMAT0046569

Sequence

40- CUUUCAGUCAGAUGUUUGCAGC -62

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