MirGeneDB ID | Sha-Mir-30-P1b |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
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Paralogues |
Sha-Mir-30-P1a
Sha-Mir-30-P1d
Sha-Mir-30-P2a
Sha-Mir-30-P2b
Sha-Mir-30-P2d
|
Orthologues |
Aca-Mir-30-P1b
Ami-Mir-30-P1b
Bta-Mir-30-P1b
Cfa-Mir-30-P1b
Cja-Mir-30-P1b
Cli-Mir-30-P1b
Cmi-Mir-30-P1b
Cpi-Mir-30-P1b
Cpo-Mir-30-P1b
Dno-Mir-30-P1b
Dre-Mir-30-P1b
Eca-Mir-30-P1b
Ete-Mir-30-P1b
Gga-Mir-30-P1b
Gja-Mir-30-P1b
Gmo-Mir-30-P1b
Hsa-Mir-30-P1b
Laf-Mir-30-P1b
Lch-Mir-30-P1b
Loc-Mir-30-P1b
Mal-Mir-30-P1b
Mdo-Mir-30-P1b
Mml-Mir-30-P1b
Mmr-Mir-30-P1b
Mmu-Mir-30-P1b
Mun-Mir-30-P1b
Oan-Mir-30-P1b
Ocu-Mir-30-P1b
Pab-Mir-30-P1b
Pbv-Mir-30-P1b
Rno-Mir-30-P1b
Spt-Mir-30-P1b
Tgu-Mir-30-P1b
Tni-Mir-30-P1b
Xla-Mir-30-P1b1
Xla-Mir-30-P1b2
Xtr-Mir-30-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL856906.1: 2327197-2327260 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAUGCAUAUUGCUGUUGACAGUGAGCGGCUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCGACUGCCUCAGACUUCAAGGAGUGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAAUGCAUAUUGCUGUUGA--| GA UC GUGAAGC
CAGU GCGGCUGUAAACAUCC GACUGGAAGCU A
GUCA CGUCGACGUUUGUAGG CUGACUUUCGG G
UUGUGAGGAACUUCAGACUCC^ GC -- GGUAGAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-30-P1b_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
|
Star sequence |
Sha-Mir-30-P1b_3p* |
mirBase accession | None |
Sequence |
42- CUUUCAGUCGGAUGUUUGCAGC -64
Get sequence
|