Mir-30-P1b

MirGeneDB ID

Rno-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-30a

Paralogues

Rno-Mir-30-P1a Rno-Mir-30-P1d Rno-Mir-30-P2a Rno-Mir-30-P2b Rno-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr9: 29542640-29542702 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P1b chr9: 29542640-29542702 [+] UCSC Ensembl
Mir-30-P2b chr9: 29562389-29562450 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGACAUAUCAAUGUUGACAGUGAGCAACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGUCUCCAACUUCAAGGAGCAAU

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAAGACAUAUCAAUGUU--|      A   A            UC           GUGAAGC 
                   GACAGUG GCA CUGUAAACAUCC  GACUGGAAGCU       \
                   CUGUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
UAACGAGGAACUUCAACCU^      C   C            --           GUAAACA 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-30-P1b_5p

mirBase accession

MIMAT0000808

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000808
TargetScanVert: rno-miR-30a-5p
miRDB: MIMAT0000808

Star sequence

Rno-Mir-30-P1b_3p*

mirBase accession

MIMAT0000809

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

Get sequence

Proposed targets

microrna.org: MIMAT0000809
TargetScanVert: rno-miR-30a-3p
miRDB: MIMAT0000809