MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-30d
Paralogues Rno-Mir-30-P1b  Rno-Mir-30-P1d  Rno-Mir-30-P2a  Rno-Mir-30-P2b  Rno-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr7: 109286472-109286533 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUAGCUUGCUGUCAGAAAGUCUGUGUCUGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACUGGCUCUUCGCAUGCAUCUUUUGGACA
Get precursor sequence
Structure
        10         20         30        40        50        60 
UUUGUAGCUUGCUGUCA-   -|   U   UCU         CCC           GUAAGC 
                  GAA AGUC GUG   GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CAU   CGUUUGUAG   CUGACUUUCGA      A
ACAGGUUUUCUACGUACG   C^   U   CGU         A--           ACCGAC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-30-P1a_5p

mirBase accessionMIMAT0000807
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000807
TargetScanVert: rno-miR-30d-5p
miRDB: MIMAT0000807
Star sequence

Rno-Mir-30-P1a_3p*

mirBase accessionMIMAT0004722
Sequence
40- CUUUCAGUCAGAUGUUUGCUGC -62
Get sequence
Proposed targets microrna.org: MIMAT0004722
TargetScanVert: rno-miR-30d-3p
miRDB: MIMAT0004722