MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-30-P1a1

Family name MIR-30 (all species)
Seed GUAAACA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-30d
Paralogues Xla-Mir-30-P1a2  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xtr-Mir-30-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030734.1: 146327036-146327098 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAACUGCCACCGGUUUGUUAGUUUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUGAGGCUGCACCUUAGCUUUCAGUCUGGUGUUUGCUGCUACCGGCUACACACAAAUCUUCCCUCGCUU
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Structure
        10          20        30        40        50        60  
GCAACUGCCACCGGUUU-  -|   UU  U  U         CCC           GUGAGGC 
                  GU UAGU  GU GC GUAAACAUC   GACUGGAAGCU       \
                  CA AUCG  CA CG CGUUUGUGG   CUGACUUUCGA       U
UUCGCUCCCUUCUAAACA  C^   GC  U  U         U--           UUCCACG 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-30-P1a1_5p
mirBase accessionMIMAT0046574
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Xla-Mir-30-P1a1_3p*
mirBase accessionMIMAT0046575
Sequence 
41- CUUUCAGUCUGGUGUUUGCUGC -63
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