MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-30d
Paralogues Cpi-Mir-30-P1b  Cpi-Mir-30-P1d  Cpi-Mir-30-P2a  Cpi-Mir-30-P2b  Cpi-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584579: 593254-593315 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P2a JH584579: 585588-585647 [-] UCSC Ensembl
Mir-30-P1a JH584579: 593254-593315 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGUAUAAUACCGUAUUGUAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGAGAAAUUCUAGCUUUCAGUCAGAUGUUUGCUGCAUCCGGCUAUUCAUGGACAACAUCAGAAGG
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Structure
        10          20        30        40        50        60 
ACAGUAUAAUACCGUAUU--|     UGU   U         CCC           GUAAGA 
                    GUAGUC   UGU GUAAACAUC   GACUGGAAGCU      G
                    UAUCGG   ACG CGUUUGUAG   CUGACUUUCGA      A
GGAAGACUACAACAGGUACU^     CCU   U         A--           UCUUAA 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-30-P1a_5p

mirBase accessionMIMAT0037681
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Cpi-Mir-30-P1a_3p*

mirBase accessionMIMAT0037682
Sequence
40- CUUUCAGUCAGAUGUUUGCUGC -62
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