Mir-30-P1a

MirGeneDB ID

Tni-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-30d

Paralogues

Tni-Mir-30-P1b Tni-Mir-30-P1d Tni-Mir-30-P2a Tni-Mir-30-P2b Tni-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

21: 5298839-5298898 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P1a 21: 5298839-5298898 [+] UCSC Ensembl
Mir-30-P2a 21: 5299014-5299077 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAACGUGAAUUCACAUGGCAGUUUGAGGCUGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACCCCCUCCGACCGCCUCCUGCUCCACGGCGACGG

Get precursor sequence

Structure

        10          20        30        40        50        60
AAAACGUGAAUUCACAU--|  A   U    CU         CCC           GUCAC 
                   GGC GUU GAGG  GUAAACAUC   GACUGGAAGCU     U
                   CCG CAG CUCC  CAUUUGUAG   CUGACUUUCGA     C
GGCAGCGGCACCUCGUCCU^  C   C    CC         U--           GACGA 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-30-P1a_5p

mirBase accession

MIMAT0002950

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Tni-Mir-30-P1a_3p*

mirBase accession

None

Sequence

38- CUUUCAGUCUGAUGUUUACCCC -60

Get sequence