MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-30d
Paralogues Cli-Mir-30-P1b  Cli-Mir-30-P1d  Cli-Mir-30-P2b  Cli-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold419: 3168635-3168692 [-]
Precursor
(pre-Mir +30nt flank)
CGCUGGCGCUGACGUGCCGUGGUCCGGUGCUGUAAACAUCCCCGACUGGAAGCUGUUCCCGUCCAGCUUUCAGUCAGAUGUUUGCUGCACCUGGCUGCGCUCGGACAACUGCAGAAGG
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Structure
        10          20        30        40        50         
CGCUGGCGCUGACGUGC--| UG   C     U         CCC           GUUC 
                   CG  GUC GGUGC GUAAACAUC   GACUGGAAGCU    C
                   GC  CGG CCACG CGUUUGUAG   CUGACUUUCGA    C
GGAAGACGUCAACAGGCUC^ GU   U     U         A--           CCUG 
      110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-30-P1a_5p
mirBase accessionMIMAT0038456
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Cli-Mir-30-P1a_3p*
mirBase accessionMIMAT0038457
Sequence 
36- CUUUCAGUCAGAUGUUUGCUGC -58
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