MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-30d
Paralogues Gga-Mir-30-P1b  Gga-Mir-30-P1d  Gga-Mir-30-P2a  Gga-Mir-30-P2b  Gga-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
2: 142647738-142647796 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P2a 2: 142644205-142644264 [-] UCSC Ensembl
Mir-30-P1a 2: 142647738-142647796 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCUGCAGUGAUGUAUAGUAGUCUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCUGCACCUGGCUAUACCUGGACAGCAUCAGGAGG
Get precursor sequence
Structure
        10          20        30        40        50          
CACCUGCAGUGAUGUAUA--|     UGU   U         CCC           GUAGC 
                    GUAGUC   UGC GUAAACAUC   GACUGGAAGCU     \
                    UAUCGG   ACG CGUUUGUAG   CUGACUUUCGA     A
GGAGGACUACGACAGGUCCA^     UCC   U         A--           GUUCG 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-30-P1a_5p

mirBase accessionMIMAT0001129
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
Proposed targets TargetScanVert: gga-miR-30d
miRDB: MIMAT0001129
Star sequence

Gga-Mir-30-P1a_3p*

mirBase accessionNone
Sequence
37- CUUUCAGUCAGAUGUUUGCUGC -59
Get sequence