MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-30c-1
Paralogues Gga-Mir-30-P1a  Gga-Mir-30-P1b  Gga-Mir-30-P1d  Gga-Mir-30-P2a  Gga-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
23: 5080082-5080142 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)
Mir-30-P1d 23: 5078861-5078924 [+] UCSC Ensembl
Mir-30-P2d 23: 5080082-5080142 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGACGUGGACCCUACCAUGCUGUAGCACGUGUAAACAUCCUACACUCUCAGCUGUGAACUCGAGGUGGCUGGGAGAGGAUUGUUUACGCCUUCUGCCAUGGAGUGAACAUCUGGUGAGCU
Get precursor sequence
Structure
        10        20           30         40        50        60 
GUGACGUGGACCCUACCAUG    A   C---        -|    ACA         GUGAAC 
                    CUGU GCA    GUGUAAAC AUCCU   CUCUCAGCU      \
                    GGUA CGU    CGCAUUUG UAGGA   GAGGGUCGG      U
UCGAGUGGUCUACAAGUGA-    C   CUUC        U^    ---         UGGAGC 
 .       110        100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-30-P2d_5p

mirBase accessionMIMAT0001137
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Proposed targets TargetScanVert: gga-miR-30c-5p
miRDB: MIMAT0001137
Star sequence

Gga-Mir-30-P2d_3p*

mirBase accessionMIMAT0031105
Sequence
39- CUGGGAGAGGAUUGUUUACGCC -61
Get sequence
Proposed targets TargetScanVert: gga-miR-30c-1-3p
miRDB: MIMAT0031105