MirGeneDB ID | Pab-Mir-30-P2d |
---|---|
Family name | MIR-30 (all species) |
Seed | GUAAACA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-30-P1a Pab-Mir-30-P1b Pab-Mir-30-P1d Pab-Mir-30-P2a Pab-Mir-30-P2b |
Orthologues | Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 192755164-192755224 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CCCUGUGGGCUAUAACCAUGCUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACAUCAGCUGAAGAAGGet precursor sequence |
Structure | 10 20 30 40 50 60 CCCUGUGGGCUAUAACC----| CU UGUGU U ACA GUGAGC AUG GUAG GUAAACA CCU CUCUCAGCU \ UAC CGUC CAUUUGU GGG GAGGGUCGG U GAAGAAGUCGACUACAAAAGG^ -- UUCCU U A-- UGGAAC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Pab-Mir-30-P2d_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
|
Star sequence | Pab-Mir-30-P2d_3p* |
mirBase accession | None |
Sequence |
39- CUGGGAGAGGGUUGUUUACUCC -61
Get sequence
|