MirGeneDB ID | Pab-Mir-30-P2d |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-30-P1a
Pab-Mir-30-P1b
Pab-Mir-30-P1d
Pab-Mir-30-P2a
Pab-Mir-30-P2b
|
Orthologues |
Aca-Mir-30-P2d
Ami-Mir-30-P2d
Bta-Mir-30-P2d
Cfa-Mir-30-P2d
Cja-Mir-30-P2d
Cli-Mir-30-P2d
Cmi-Mir-30-P2d
Cpi-Mir-30-P2d
Cpo-Mir-30-P2d
Dno-Mir-30-P2d
Dre-Mir-30-P2d
Eca-Mir-30-P2d
Ete-Mir-30-P2d
Gga-Mir-30-P2d
Gja-Mir-30-P2d
Gmo-Mir-30-P2d
Hsa-Mir-30-P2d
Laf-Mir-30-P2d
Lch-Mir-30-P2d
Loc-Mir-30-P2d
Mal-Mir-30-P2d
Mdo-Mir-30-P2d
Mml-Mir-30-P2d
Mmr-Mir-30-P2d
Mmu-Mir-30-P2d
Mun-Mir-30-P2d
Neu-Mir-30-P2d
Oan-Mir-30-P2d
Ocu-Mir-30-P2d
Pbv-Mir-30-P2d
Rno-Mir-30-P2d
Sha-Mir-30-P2d
Spt-Mir-30-P2d
Sto-Mir-30-P2d
Tgu-Mir-30-P2d
Tni-Mir-30-P2d
Xla-Mir-30-P2d1
Xla-Mir-30-P2d2
Xtr-Mir-30-P2d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 192755164-192755224 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCUGUGGGCUAUAACCAUGCUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACAUCAGCUGAAGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCUGUGGGCUAUAACC----| CU UGUGU U ACA GUGAGC
AUG GUAG GUAAACA CCU CUCUCAGCU \
UAC CGUC CAUUUGU GGG GAGGGUCGG U
GAAGAAGUCGACUACAAAAGG^ -- UUCCU U A-- UGGAAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pab-Mir-30-P2d_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
|
Star sequence |
Pab-Mir-30-P2d_3p* |
mirBase accession | None |
Sequence |
39- CUGGGAGAGGGUUGUUUACUCC -61
Get sequence
|