MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-30-P1a  Lch-Mir-30-P1b  Lch-Mir-30-P1d  Lch-Mir-30-P2a  Lch-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126929.1: 1094991-1095051 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAUGUAGAAGCUGCCAUGUAGUAGUGCGUGUAAACAUCCUACACUCUCAGCUGUGUAUGUGAGCAAGCUGGGAGAGGGGUGUUUACUCUCAUUUCCAUGGGCUGAACAUCAGAGGAAUA
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Structure
        10            20        30        40        50        60 
GCCAUGUAGAAGCUGCC----|  UAGU    CGU           ACA         GUGUAU 
                     AUG    AGUG   GUAAACAUCCU   CUCUCAGCU      \
                     UAC    UUAC   CAUUUGUGGGG   GAGGGUCGA      G
AUAAGGAGACUACAAGUCGGG^  CU--    UCU           A--         ACGAGU 
 .       110       100          90        80          70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-30-P2d_5p (predicted)

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Lch-Mir-30-P2d_3p* (predicted)

mirBase accessionNone
Sequence
39- CUGGGAGAGGGGUGUUUACUCU -61
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