MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-30-P1a  Lch-Mir-30-P1b  Lch-Mir-30-P2a  Lch-Mir-30-P2b  Lch-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126929.1: 1095854-1095915 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UACUGUUUCUGAUAUGGCACUCAUUGCCACUGUAAACAUCCUUGACUGGAAGCUAAAAGAAAAUAGGGGGCUUUCAGUCAGAUGUUUGCAGCGGCUGGAUACCACAAUCUUCAAAGGCAGAG
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Structure
        10        20           30        40        50        60 
UACUGUUUCUGAUAUGGCAC---| AUU   A           CU            AAAAGA 
                       UC   GCC CUGUAAACAUC  UGACUGGAAGCU      A
                       AG   CGG GACGUUUGUAG  ACUGACUUUCGG      A
GAGACGGAAACUUCUAACACCAU^ GU-   C           --            GGGAUA 
120       110       100         90          80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-30-P1d_5p (predicted)

mirBase accessionNone
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Lch-Mir-30-P1d_3p* (predicted)

mirBase accessionNone
Sequence
40- CUUUCAGUCAGAUGUUUGCAGC -62
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