Mir-30-P1d

MirGeneDB ID

Aca-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-30e

Paralogues

Aca-Mir-30-P1a Aca-Mir-30-P1b Aca-Mir-30-P2a Aca-Mir-30-P2b Aca-Mir-30-P2d

Orthologues

Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL343308.1: 250303-250366 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCCUGGAUCUAUGUAGGCAGUUGUGCUCCUGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCUGCGUUCCUCCUGAAACCAC

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Structure

        10           20        30        40        50        60  
AUCCUGGAUCUAUGUAG---|     G    C            UU           GUGCAAG 
                    GCAGUU UGCU CUGUAAACAUCC  GACUGGAAGCU       G
                    CGUCGG ACGG GACAUUUGUAGG  CUGACUUUCGG       C
CACCAAAGUCCUCCUUGCGU^     -    C            --           GGAAACU 
  120       110       100         90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-30-P1d_5p

mirBase accession

MIMAT0021928

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

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Co-mature sequence

Aca-Mir-30-P1d_3p

mirBase accession

MIMAT0021929

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

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