Mir-30-P1d

MirGeneDB ID

Mal-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-30-P1a Mal-Mir-30-P1b Mal-Mir-30-P2a Mal-Mir-30-P2b Mal-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884770.1: 884406-884470 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUUUCCAUUGUUGGCAACCUGGAGGGGCUGUAAACAUCCUUGACUGGAAGCUGGGGUUUGGACGGUGAAGGCUUUCAGUCGGAUGUUUGCAGCACCUUAUUGCCUCUGACAGCCAACAGUAAU

Get precursor sequence

Structure

        10        20          30        40        50        60   
GCUUUUCCAUUGUUGGCAACCUG--|   G             UU           GGGGUUUG 
                         GAGG GCUGUAAACAUCC  GACUGGAAGCU        \
                         UUCC CGACGUUUGUAGG  CUGACUUUCGG        G
UAAUGACAACCGACAGUCUCCGUUA^   A             --           AAGUGGCA 
   120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-30-P1d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Mal-Mir-30-P1d_3p*

mirBase accession

None

Sequence

43- CUUUCAGUCGGAUGUUUGCAGC -65

Get sequence