MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-30-P1d4

Family name MIR-30 (all species)
Seed GUAAACA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-30-P1a  Sto-Mir-30-P1d3  Sto-Mir-30-P2a  Sto-Mir-30-P2b  Sto-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xtr-Mir-30-P1d 
Node of Origin (locus) Chondrichthyes
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01005240.1: 133181-133243 [-]
Precursor
(pre-Mir +30nt flank)
AUGGUGUUGAUUGCUGGCAGUUUAUACUGUUGUAAACAUCCUUGACUGGAAGCUGUUUGGAGAUGGAUAGGCUUUCAGUCAGAUGUUUGCAGCUGUUGACUGCUGCUUACUUCAAUGAAUCAC
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Structure
        10         20         30        40        50        60  
AUGGUGUUGAUUGCUGG-    UUAU-| U            CU            GUUUGGA 
                  CAGU     AC GUUGUAAACAUC  UGACUGGAAGCU       \
                  GUCG     UG CGACGUUUGUAG  ACUGACUUUCGG       G
CACUAAGUAACUUCAUUC    UCAGU^ U            --            AUAGGUA 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Sto-Mir-30-P1d4_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Sto-Mir-30-P1d4_3p*

mirBase accessionNone
Sequence
41- CUUUCAGUCAGAUGUUUGCAGC -63
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