Mir-30-P1d4

MirGeneDB ID

Sto-Mir-30-P1d4

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-30-P1a Sto-Mir-30-P1d3 Sto-Mir-30-P2a Sto-Mir-30-P2b Sto-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Tgu-Mir-30-P1d Tni-Mir-30-P1d Xtr-Mir-30-P1d

Node of Origin (locus)

Chondrichthyes

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005240.1: 133181-133243 [-]

Precursor
(pre-Mir +30nt flank)

AUGGUGUUGAUUGCUGGCAGUUUAUACUGUUGUAAACAUCCUUGACUGGAAGCUGUUUGGAGAUGGAUAGGCUUUCAGUCAGAUGUUUGCAGCUGUUGACUGCUGCUUACUUCAAUGAAUCAC

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Structure

        10         20         30        40        50        60  
AUGGUGUUGAUUGCUGG-    UUAU-| U            CU            GUUUGGA 
                  CAGU     AC GUUGUAAACAUC  UGACUGGAAGCU       \
                  GUCG     UG CGACGUUUGUAG  ACUGACUUUCGG       G
CACUAAGUAACUUCAUUC    UCAGU^ U            --            AUAGGUA 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Sto-Mir-30-P1d4_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

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Star sequence

Sto-Mir-30-P1d4_3p*

mirBase accession

None

Sequence

41- CUUUCAGUCAGAUGUUUGCAGC -63

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