MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-30e
Paralogues Cfa-Mir-30-P1a  Cfa-Mir-30-P1b  Cfa-Mir-30-P2a  Cfa-Mir-30-P2b  Cfa-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr15: 2283306-2283369 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P2d chr15: 2280050-2280110 [-] UCSC Ensembl
Mir-30-P1d chr15: 2283306-2283369 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCGUCCUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUCAGAGGGGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCACGGUCGUCCCCA
Get precursor sequence
Structure
        10            20        30        40        50        60  
GCUCCGUCCUUUCUGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGG       C
ACCCCUGCUGGCACUGGCACC^     --  GC            --           GGAGACU 
  120       110       100          90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-30-P1d_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Star sequence

Cfa-Mir-30-P1d_3p*

mirBase accessionMIMAT0006627
Sequence
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence
Proposed targets TargetScanVert: cfa-miR-30e
miRDB: MIMAT0006627