Mir-30-P1d

MirGeneDB ID

Gja-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-30-P1a Gja-Mir-30-P1b Gja-Mir-30-P2a Gja-Mir-30-P2b Gja-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015174883.1: 338146-338209 [-]

Precursor
(pre-Mir +30nt flank)

CCUGUGUCUUUUCUGGGCAGUCGUUGCUCCUGUAAACAUCCUUGACUGGAAGCUGUACAGUGCUCAGGAGGGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGUCCUCCUGAACAGAA

Get precursor sequence

Structure

        10            20        30        40        50        60  
CCUGUGUCUUUUCUGGG----|    GU    C            UU           GUACAGU 
                     CAGUC  UGCU CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGG  ACGG GACAUUUGUAGG  CUGACUUUCGG       C
AAGACAAGUCCUCCUGACACC^    --    C            --           GAGGACU 
  120       110       100          90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-30-P1d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Gja-Mir-30-P1d_3p*

mirBase accession

None

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence