MirGeneDB ID | Cja-Mir-30-P1d |
---|---|
Family name | MIR-30 (all species) |
Seed | GUAAACA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-30-P1a Cja-Mir-30-P1b Cja-Mir-30-P2a Cja-Mir-30-P2b Cja-Mir-30-P2d |
Orthologues | Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021921.1: 74354142-74354205 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCUCCGUUCUUUUUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUGAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCAUCCCCAGCUGCGGet precursor sequence |
Structure | 10 20 30 40 50 60 UCUCCGUUCUUUUUGGG----| UU UA UU GUAAGGU CAGUCU GC CUGUAAACAUCC GACUGGAAGCU G GUCGGA CG GACAUUUGUAGG CUGACUUUCGA U GCGUCGACCCCUACUGGCACC^ -- GC -- GGAGAGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Cja-Mir-30-P1d_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
|
Star sequence | Cja-Mir-30-P1d_3p* |
mirBase accession | None |
Sequence |
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence
|