Mir-30-P1d

MirGeneDB ID

Cpo-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-30e

Paralogues

Cpo-Mir-30-P1a Cpo-Mir-30-P1b Cpo-Mir-30-P2a Cpo-Mir-30-P2b Cpo-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_180: 168140-168203 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P1d scaffold_180: 168140-168203 [+] UCSC
Mir-30-P2d scaffold_180: 170974-171034 [+] UCSC

Precursor
(pre-Mir +30nt flank)

AGCUCUGUUUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAAGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCAUCCCCAGCUGCA

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Structure

        10            20        30        40        50        60  
AGCUCUGUUUUUCUGGG----|     UU  UA            UU           GUAAAGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
ACGUCGACCCCUACUGGCACC^     --  GC            --           GGAGACU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-30-P1d_5p

mirBase accession

MIMAT0046912

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

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Star sequence

Cpo-Mir-30-P1d_3p*

mirBase accession

MIMAT0046913

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

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