MirGeneDB ID | Loc-Mir-30-P1d |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
Loc-Mir-30-P1a
Loc-Mir-30-P1b
Loc-Mir-30-P2a
Loc-Mir-30-P2b
Loc-Mir-30-P2d
|
Orthologues |
Aca-Mir-30-P1d
Ami-Mir-30-P1d
Bta-Mir-30-P1d
Cfa-Mir-30-P1d
Cja-Mir-30-P1d
Cli-Mir-30-P1d
Cmi-Mir-30-P1d3
Cmi-Mir-30-P1d4
Cpi-Mir-30-P1d
Cpo-Mir-30-P1d
Dno-Mir-30-P1d
Dre-Mir-30-P1d
Eca-Mir-30-P1d
Ete-Mir-30-P1d
Gga-Mir-30-P1d
Gja-Mir-30-P1d
Gmo-Mir-30-P1d
Hsa-Mir-30-P1d
Laf-Mir-30-P1d
Lch-Mir-30-P1d
Mal-Mir-30-P1d
Mdo-Mir-30-P1d
Mml-Mir-30-P1d
Mmr-Mir-30-P1d
Mmu-Mir-30-P1d
Mun-Mir-30-P1d
Neu-Mir-30-P1d
Oan-Mir-30-P1d
Ocu-Mir-30-P1d
Pab-Mir-30-P1d
Pbv-Mir-30-P1d
Rno-Mir-30-P1d
Sha-Mir-30-P1d
Spt-Mir-30-P1d
Sto-Mir-30-P1d3
Sto-Mir-30-P1d4
Tgu-Mir-30-P1d
Tni-Mir-30-P1d
Xla-Mir-30-P1d1
Xla-Mir-30-P1d2
Xtr-Mir-30-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG6: 589512-589575 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGAUCUUGUCUCUGACAGCUGGGGGCGCUGUAAACAUCCUUGACUGGAAGCUGUGUGGAGACCGGAUGGGCUUUCAGUCGGAUGUUUGCAGCGGCCGGCUGCCACUUUGCCCACGAGCCUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGAUCUUGUCUCUGA----| GG G UU GUGUGGA
CAGCU GG CGCUGUAAACAUCC GACUGGAAGCU G
GUCGG CC GCGACGUUUGUAGG CUGACUUUCGG A
GUUCCGAGCACCCGUUUCACC^ -- G -- GUAGGCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-30-P1d_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
|
Star sequence |
Loc-Mir-30-P1d_3p* |
mirBase accession | None |
Sequence |
42- CUUUCAGUCGGAUGUUUGCAGC -64
Get sequence
|