MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-30e
Paralogues Oan-Mir-30-P1a  Oan-Mir-30-P1b  Oan-Mir-30-P2a  Oan-Mir-30-P2b  Oan-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041743.1: 40945688-40945750 [+]
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P1d NC_041743.1: 40945688-40945750 [+]
Mir-30-P2d NC_041743.1: 40947632-40947692 [+]
Precursor
(pre-Mir +30nt flank)
ACCCCGCGCGUCCUCGACAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGGAAGGUGCCGAAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGUCGGCCCGACCCGCC
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Structure
        10            20        30        40        50        60  
ACCCCGCGCGUCCUCGA----|     UU  UA            UU           GGAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       G
CCGCCCAGCCCGGCUGACACC^     --  GC            --           GGAAGCC 
 120       110       100          90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-30-P1d_5p

mirBase accessionMIMAT0007203
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Oan-Mir-30-P1d_3p*

mirBase accessionMIMAT0007204
Sequence
41- CUUUCAGUCGGAUGUUUACAGC -63
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