MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-30c-2
Paralogues Oan-Mir-30-P1a  Oan-Mir-30-P1b  Oan-Mir-30-P1d  Oan-Mir-30-P2a  Oan-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041728.1: 83138851-83138911 [-]
Clustered miRNAs
(< 50kb from Mir-30-P2b)
Mir-30-P2b NC_041728.1: 83138851-83138911 [-]
Mir-30-P1b NC_041728.1: 83171461-83171524 [-]
Precursor
(pre-Mir +30nt flank)
CUGUUCUAAAGAGCCCUGAGUGACAGGUACUGUAAACAUCCUACACUCUCAGCUGUAGAUGUGAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAGCCAAAGAGAACA
Get precursor sequence
Structure
        10        20         30            40        50        60 
CUGUUCUAAAGAGCCCUGAGUGA -     CU----|      U   ACA         GUAGAU 
                       C AGGUA      GUAAACA CCU   CUCUCAGCU      \
                       G UCCGU      CAUUUGU GGA   GAGGGUCGA      G
ACAAGAGAAACCGACUAAAG--- U     CUCUCU^      C   A--         AAGAGU 
 .       110          100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-30-P2b_5p

mirBase accessionMIMAT0006911
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Star sequence

Oan-Mir-30-P2b_3p*

mirBase accessionMIMAT0006912
Sequence
39- CUGGGAGAAGGCUGUUUACUCU -61
Get sequence