Mir-30-P2b

MirGeneDB ID

Tni-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-30c

Paralogues

Tni-Mir-30-P1a Tni-Mir-30-P1b Tni-Mir-30-P1d Tni-Mir-30-P2a Tni-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

17: 8584380-8584441 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGUCCAUUUGACGUUUGGGUUUCAGGGAGUGUAAACAUCCUACACUCUCGGCGUCCGCCCCCUGGUGGCCGGGGGUGGGACUGUUUGCACUGCCUGGCUCAGGAAUUCAGCUGGAGAUAAA

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Structure

        10            20        30         40        50        60 
AUGUCCAUUUGACGUUU----|   UU    G          -   UA          GUCCGCC 
                     GGGU  CAGG AGUGUAAACA UCC  CACUCUCGGC       \
                     CUCG  GUCC UCACGUUUGU AGG  GUGGGGGCCG       C
AAAUAGAGGUCGACUUAAGGA^   --    G          C   --          GUGGUCC 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-30-P2b_5p

mirBase accession

MIMAT0003023

Sequence

0- UGUAAACAUCCUACACUCUCGGCG -24

Get sequence

Star sequence

Tni-Mir-30-P2b_3p*

mirBase accession

None

Sequence

39- CCGGGGGUGGGACUGUUUGCACU -62

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