Mir-30-P2a

MirGeneDB ID

Aca-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-30b

Paralogues

Aca-Mir-30-P1a Aca-Mir-30-P1b Aca-Mir-30-P1d Aca-Mir-30-P2b Aca-Mir-30-P2d

Orthologues

Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

4: 1747987-1748046 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P2a 4: 1747987-1748046 [-] UCSC Ensembl
Mir-30-P1a 4: 1751122-1751178 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAGUAUUGUUACUACUGAUUUUUAGUUCAUGUAAACAUCCUACACUCAGCUGUAUCACAUGAAAUGGCUGGGAGAUGAAUGUUUACUUCAACUGAUUUGGACAGGCGGCCUUCCAGAAU

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Structure

        10        20          30        40        50         
UUAGUAUUGUUACUACUGAUUU--|     CAU        CCUACA       GUAUCA 
                        UUAGUU   GUAAACAU      CUCAGCU      C
                        AGUCAA   CAUUUGUA      GGGUCGG      A
UAAGACCUUCCGGCGGACAGGUUU^     CUU        AGUAGA       UAAAGU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-30-P2a_5p

mirBase accession

MIMAT0021922

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

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Star sequence

Aca-Mir-30-P2a_3p*

mirBase accession

MIMAT0021923

Sequence

38- CUGGGAGAUGAAUGUUUACUUC -60

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