MirGeneDB ID | Neu-Mir-30-P2a |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
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Paralogues |
Neu-Mir-30-P1a
Neu-Mir-30-P1d
Neu-Mir-30-P2b
Neu-Mir-30-P2d
|
Orthologues |
Aca-Mir-30-P2a
Ami-Mir-30-P2a
Bta-Mir-30-P2a
Cfa-Mir-30-P2a
Cja-Mir-30-P2a
Cmi-Mir-30-P2a
Cpi-Mir-30-P2a
Cpo-Mir-30-P2a
Dno-Mir-30-P2a
Dre-Mir-30-P2a
Eca-Mir-30-P2a
Ete-Mir-30-P2a
Gga-Mir-30-P2a
Gja-Mir-30-P2a
Gmo-Mir-30-P2a
Hsa-Mir-30-P2a
Laf-Mir-30-P2a
Lch-Mir-30-P2a
Loc-Mir-30-P2a
Mal-Mir-30-P2a
Mdo-Mir-30-P2a
Mml-Mir-30-P2a
Mmr-Mir-30-P2a
Mmu-Mir-30-P2a
Mun-Mir-30-P2a
Oan-Mir-30-P2a
Ocu-Mir-30-P2a
Pab-Mir-30-P2a
Pbv-Mir-30-P2a
Rno-Mir-30-P2a
Sha-Mir-30-P2a
Spt-Mir-30-P2a
Sto-Mir-30-P2a
Tgu-Mir-30-P2a
Tni-Mir-30-P2a
Xla-Mir-30-P2a1
Xla-Mir-30-P2a2
Xtr-Mir-30-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051816.1: 104491373-104491431 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCUGGUCAUUAAACUGAGUUCCAGUUCAUGUAAACAUCCUACACUCAGCUGUAACACAUGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAACAGCCUAUUAACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGCUGGUCAUUAAACU----| UC CAU U A- GUAACA
GAGU CAGUU GUAAACAUCC AC CUCAGCU \
UUCA GUCGA CAUUUGUAGG UG GGGUCGG C
UACAAUUAUCCGACAAUAAGG^ -- CUU - GA UUAGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Mature sequence |
Neu-Mir-30-P2a_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
Star sequence |
Neu-Mir-30-P2a_3p* |
mirBase accession | None |
Sequence |
37- CUGGGAGGUGGAUGUUUACUUC -59
Get sequence
|