MirGeneDB 3.0

MirGeneDB ID

Neu-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Tammar Wallaby (Notamacropus eugenii)
MiRBase ID
Paralogues Neu-Mir-30-P1a  Neu-Mir-30-P1d  Neu-Mir-30-P2b  Neu-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028372415.1_mMacEug1.pri)
CM051816.1: 104491373-104491431 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUGGUCAUUAAACUGAGUUCCAGUUCAUGUAAACAUCCUACACUCAGCUGUAACACAUGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAACAGCCUAUUAACAU
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Structure
        10            20        30        40         50         
AAGCUGGUCAUUAAACU----|   UC     CAU          U  A-       GUAACA 
                     GAGU  CAGUU   GUAAACAUCC AC  CUCAGCU      \
                     UUCA  GUCGA   CAUUUGUAGG UG  GGGUCGG      C
UACAAUUAUCCGACAAUAAGG^   --     CUU          -  GA       UUAGUA 
       110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-30-P2a_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Neu-Mir-30-P2a_3p*

mirBase accessionNone
Sequence
37- CUGGGAGGUGGAUGUUUACUUC -59
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