Mir-30-P2a

MirGeneDB ID

Gga-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-30b

Paralogues

Gga-Mir-30-P1a Gga-Mir-30-P1b Gga-Mir-30-P1d Gga-Mir-30-P2b Gga-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

2: 142644205-142644264 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P2a 2: 142644205-142644264 [-] UCSC Ensembl
Mir-30-P1a 2: 142647738-142647796 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUUAUAUUGUUAAGCUAACUUUUAGUUCCUGUAAACAUCCUACACUCAGCUAUAACAAGUGGUAGGGCUGGGGGGUGGAUGUUUACUUCAACUGACUUGGAAAGGCAGCUUUCCUGAAU

Get precursor sequence

Structure

        10        20          30        40         50         
AUUUAUAUUGUUAAGCUAACUU--|     CCU          U  A-       AUAACA 
                        UUAGUU   GUAAACAUCC AC  CUCAGCU      A
                        AGUCAA   CAUUUGUAGG UG  GGGUCGG      G
UAAGUCCUUUCGACGGAAAGGUUC^     CUU          -  GG       GAUGGU 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-30-P2a_5p

mirBase accession

MIMAT0001130

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-30b-5p
miRDB: MIMAT0001130

Star sequence

Gga-Mir-30-P2a_3p*

mirBase accession

MIMAT0026512

Sequence

38- CUGGGGGGUGGAUGUUUACUUC -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-30b-3p
miRDB: MIMAT0026512