MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-30e
Paralogues Tgu-Mir-30-P1a  Tgu-Mir-30-P1b  Tgu-Mir-30-P1d  Tgu-Mir-30-P2b  Tgu-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
2: 144090098-144090157 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a 2: 144090098-144090157 [-] UCSC Ensembl
Mir-30-P1a 2: 144093706-144093764 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUAUAUAGUUCAGCUAAUUUUUAGUUCCUGUAAACAUCCUACACUCAGCUAUUAUAAGUGGUGGGGCUGGGGGUUGGGUGUUUACUUCAACUGACUUGGAAAGGCAGCUUUCCUCAAU
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Structure
        10        20          30        40        50         
AUUUAUAUAGUUCAGCUAAUUU--|     CCU          U  A       AUUAUA 
                        UUAGUU   GUAAACAUCC AC CUCAGCU      A
                        AGUCAA   CAUUUGUGGG UG GGGUCGG      G
UAACUCCUUUCGACGGAAAGGUUC^     CUU          U  G       GGUGGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-30-P2a_5p

mirBase accessionMIMAT0025411
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Tgu-Mir-30-P2a_3p* (predicted)

mirBase accessionNone
Sequence
38- CUGGGGGUUGGGUGUUUACUUC -60
Get sequence