MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-30-P1a  Lch-Mir-30-P1d  Lch-Mir-30-P2a  Lch-Mir-30-P2b  Lch-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH129264.1: 106248-106311 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUAACUGCUGCUGUUGACAGUGGGUGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGUGGCUUUCAGUCGGAUGUUUGCUGCUGCCAGCUGCCACGGACUUCAAGAAGCUGA
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAUAACUGCUGCUGUU--|A    G    ACU          UC           GUGAAGC 
                   G CAGU GGUG   GUAAACAUCC  GACUGGAAGCU       A
                   C GUCG CCGU   CGUUUGUAGG  CUGACUUUCGG       G
AGUCGAAGAACUUCAGGCA^C    A    CGU          --           UGUAGAC 
  120       110       100        90          80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-30-P1b_5p (predicted)

mirBase accessionNone
Sequence
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
Star sequence

Lch-Mir-30-P1b_3p* (predicted)

mirBase accessionNone
Sequence
42- CUUUCAGUCGGAUGUUUGCUGC -64
Get sequence