Mir-30-P1b

MirGeneDB ID

Cmi-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-30-P1a Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cmi-Mir-30-P2a Cmi-Mir-30-P2b Cmi-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635974.1: 369842-369903 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGGCUGGGCUGGUCGGCAAUGUGAGCUACUGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCGAUUGCCAAGGACUGCUGGACGGCAG

Get precursor sequence

Structure

        10            20        30        40        50        60 
GGGGCUGGGCUGGUCGG----|   G  A  UA            UC           GUGAGG 
                     CAAU UG GC  CUGUAAACAUCC  GACUGGAAGCU      G
                     GUUA GC CG  GACGUUUGUAGG  CUGACUUUCGG      G
GACGGCAGGUCGUCAGGAACC^   -  -  UC            --           GUAACC 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-30-P1b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Star sequence

Cmi-Mir-30-P1b_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCGGAUGUUUGCAGC -62

Get sequence