Mir-30-P1b

MirGeneDB ID

Eca-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-30-P1a Eca-Mir-30-P1d Eca-Mir-30-P2a Eca-Mir-30-P2b Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009167.1: 63894235-63894290 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGGAGCCCGCGCCCCGGCAGCGGGCGCCUGUAAACACCCGACUGGAAGCCGUGGGCGGCGGGCUUUCAGUCGGGUGUCUGCAGCCGCCGCCUGCCCCGCCCCGCGCCGCGCUCG

Get precursor sequence

Structure

        10          20        30        40        50       
AGAGGAGCCCGCGCCCC--|    CG    C     A                 GUGG 
                   GGCAG  GGCG CUGUA ACACCCGACUGGAAGCC    G
                   CCGUC  CCGC GACGU UGUGGGCUGACUUUCGG    C
GCUCGCGCCGCGCCCCGCC^    CG    C     C                 GCGG 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-30-P1b_5p

mirBase accession

None

Sequence

0- UGUAAACACCCGACUGGAAGCC -22

Get sequence

Star sequence

Eca-Mir-30-P1b_3p*

mirBase accession

None

Sequence

34- CUUUCAGUCGGGUGUCUGCAGC -56

Get sequence