MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Horse (Equus caballus)
MiRBase ID
Paralogues Eca-Mir-30-P1a  Eca-Mir-30-P1d  Eca-Mir-30-P2a  Eca-Mir-30-P2b  Eca-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009167.1: 63894235-63894290 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGGAGCCCGCGCCCCGGCAGCGGGCGCCUGUAAACACCCGACUGGAAGCCGUGGGCGGCGGGCUUUCAGUCGGGUGUCUGCAGCCGCCGCCUGCCCCGCCCCGCGCCGCGCUCG
Get precursor sequence
Structure
        10          20        30        40        50       
AGAGGAGCCCGCGCCCC--|    CG    C     A                 GUGG 
                   GGCAG  GGCG CUGUA ACACCCGACUGGAAGCC    G
                   CCGUC  CCGC GACGU UGUGGGCUGACUUUCGG    C
GCUCGCGCCGCGCCCCGCC^    CG    C     C                 GCGG 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-30-P1b_5p
mirBase accessionNone
Sequence 
0- UGUAAACACCCGACUGGAAGCC -22
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Star sequence

Eca-Mir-30-P1b_3p*
mirBase accessionNone
Sequence 
34- CUUUCAGUCGGGUGUCUGCAGC -56
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