Mir-30-P1b

MirGeneDB ID

Bta-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-30a

Paralogues

Bta-Mir-30-P1a Bta-Mir-30-P1d Bta-Mir-30-P2a Bta-Mir-30-P2b Bta-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037336.1: 10532174-10532236 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P2b NC_037336.1: 10494828-10494889 [-] UCSC Ensembl
Mir-30-P1b NC_037336.1: 10532174-10532236 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAAGGAGUGUCCCUGUGACAGUGAGCGGCUGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCAGCUGCCGACUGCCGCCCACGUCAGGAGCCCCC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GCAAGGAGUGUCCCUGU--|A    GA                UC           GUGAGGC 
                   G CAGU  GCGGCUGUAAACAUCC  GACUGGAAGCU       \
                   C GUCA  CGUCGACGUUUGUAGG  CUGACUUUCGG       U
CCCCCGAGGACUGCACCCG^C    GC                --           AAAGACG 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-30-P1b_5p

mirBase accession

MIMAT0003841

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-30a-5p

Star sequence

Bta-Mir-30-P1b_3p*

mirBase accession

None

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

Get sequence