MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-30d
Paralogues Ami-Mir-30-P1b  Ami-Mir-30-P1d  Ami-Mir-30-P2a  Ami-Mir-30-P2b  Ami-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017708043.1: 6771347-6771408 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P2a NW_017708043.1: 6765030-6765089 [-] UCSC
Mir-30-P1a NW_017708043.1: 6771347-6771408 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCAGUAUAAUGAUGAAUGGGAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGAGAAAUUCUAGCUUUCAGUCAGAUGUUUGCUGCCACUGGCUACUCUCAACUACGUCGGAAAGA
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Structure
        10         20         30        40        50        60 
GCAGUAUAAUGAUGAAU-   -|   U  U  U         CCC           GUAAGA 
                  GGG AGUC GU GU GUAAACAUC   GACUGGAAGCU      G
                  CUC UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AGAAAGGCUGCAUCAACU   A^   U  C  U         A--           UCUUAA 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-30-P1a_5p

mirBase accessionMIMAT0038084
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Ami-Mir-30-P1a_3p*

mirBase accessionMIMAT0038085
Sequence
40- CUUUCAGUCAGAUGUUUGCUGC -62
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