MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-30d
Paralogues Xtr-Mir-30-P1b  Xtr-Mir-30-P1d  Xtr-Mir-30-P2a  Xtr-Mir-30-P2b  Xtr-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr6: 126121139-126121201 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P1a chr6: 126121139-126121201 [+] UCSC Ensembl
Mir-30-P2a chr6: 126125385-126125444 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAACCACAACCGGUUUUGUAGUUUGUCGCUGUAAACAUCCCCGACUGGAAGCUGUGAGGCUGCAUUUGAGCUUUCAGUCUGGUGUUUGCUGCUACCGGCUACAGACGCUUCUCCCCCUCGCA
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Structure
        10          20        30        40        50        60  
GAAACCACAACCGGUUU--|     UU  C  U         CCC           GUGAGGC 
                   UGUAGU  GU GC GUAAACAUC   GACUGGAAGCU       \
                   ACAUCG  CA CG CGUUUGUGG   CUGACUUUCGA       U
ACGCUCCCCCUCUUCGCAG^     GC  U  U         U--           GUUUACG 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-30-P1a_5p

mirBase accessionMIMAT0003657
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Proposed targets TargetScanVert: xtr-miR-30d
Star sequence

Xtr-Mir-30-P1a_3p*

mirBase accessionNone
Sequence
41- CUUUCAGUCUGGUGUUUGCUGC -63
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