MirGeneDB ID | Sha-Mir-30-P1a |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-30-P1b
Sha-Mir-30-P1d
Sha-Mir-30-P2a
Sha-Mir-30-P2b
Sha-Mir-30-P2d
|
Orthologues |
Aca-Mir-30-P1a
Ami-Mir-30-P1a
Bta-Mir-30-P1a
Cfa-Mir-30-P1a
Cja-Mir-30-P1a
Cli-Mir-30-P1a
Cmi-Mir-30-P1a
Cpi-Mir-30-P1a
Cpo-Mir-30-P1a
Dno-Mir-30-P1a
Dre-Mir-30-P1a
Eca-Mir-30-P1a
Ete-Mir-30-P1a
Gga-Mir-30-P1a
Gja-Mir-30-P1a
Gmo-Mir-30-P1a
Hsa-Mir-30-P1a
Laf-Mir-30-P1a
Lch-Mir-30-P1a
Loc-Mir-30-P1a
Mal-Mir-30-P1a
Mdo-Mir-30-P1a
Mml-Mir-30-P1a
Mmr-Mir-30-P1a
Mmu-Mir-30-P1a
Mun-Mir-30-P1a
Neu-Mir-30-P1a
Oan-Mir-30-P1a
Ocu-Mir-30-P1a
Pab-Mir-30-P1a
Pbv-Mir-30-P1a
Rno-Mir-30-P1a
Spt-Mir-30-P1a
Sto-Mir-30-P1a
Tgu-Mir-30-P1a
Tni-Mir-30-P1a
Xla-Mir-30-P1a1
Xla-Mir-30-P1a2
Xtr-Mir-30-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL841396.1: 3882213-3882274 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUGGUAAUUGUCAAUGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAAUCACAAACAUCAUCAUGUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUUGGUAAUUGUCAAUGAA--| U U U CCC GUAAGA
AGUC GU GU GUAAACAUC GACUGGAAGCU C
UCGG CA CG CGUUUGUAG CUGACUUUCGA A
AUUGUACUACUACAAACACUAA^ C U U A-- ACCGAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-30-P1a_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
|
Star sequence |
Sha-Mir-30-P1a_3p* |
mirBase accession | None |
Sequence |
40- CUUUCAGUCAGAUGUUUGCUGC -62
Get sequence
|