MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-30-P1b  Sha-Mir-30-P1d  Sha-Mir-30-P2a  Sha-Mir-30-P2b  Sha-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL841396.1: 3882213-3882274 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUGGUAAUUGUCAAUGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAAUCACAAACAUCAUCAUGUUA
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Structure
        10        20          30        40        50        60 
AGUUGGUAAUUGUCAAUGAA--|   U  U  U         CCC           GUAAGA 
                      AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                      UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AUUGUACUACUACAAACACUAA^   C  U  U         A--           ACCGAC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-30-P1a_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Sha-Mir-30-P1a_3p*

mirBase accessionNone
Sequence
40- CUUUCAGUCAGAUGUUUGCUGC -62
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