MirGeneDB ID | Ebu-Mir-219-P5 |
Family name |
MIR-219 (all species) |
Seed |
GAUUGUC |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-219-P6
|
Orthologues |
Aae-Mir-219
Bfl-Mir-219
Bge-Mir-219
Bla-Mir-219
Cgi-Mir-219
Cin-Mir-219
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dpu-Mir-219
Dsi-Mir-219
Dya-Mir-219
Esc-Mir-219
Isc-Mir-219
Lan-Mir-219
Obi-Mir-219
Ovu-Mir-219
Pfl-Mir-219
Pmi-Mir-219
Sko-Mir-219
Spu-Mir-219
Tca-Mir-219
Xbo-Mir-219
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02010268.1: 1198023-1198090 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUCAGAGCAUGCAUUCGACUCUCCGCUGUUGAUUGUCCAAACGCAAUUCUUGCCGGGCGUUUGUGCGCAGCGCAAGGGUUGUGCAUUGGACAUCAACAGCUGUGCGGUCACUGCGACCAAGAGUACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGUCAGAGCAUGCAUUC- CUCC-| U A- CCGGGCGUU
GACU GCUGUUGAU GUCCAA CGCAAUUCUUG U
CUGG CGACAACUA CAGGUU GUGUUGGGAAC G
CCAUGAGAACCAGCGUCA CGUGU^ - AC GCGACGCGU
120 110 100 90 80 70 |
Deep sequencing |
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-219-P5_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
|
Co-mature sequence |
Ebu-Mir-219-P5_3p (predicted) |
mirBase accession | None |
Sequence |
45- AGGGUUGUGCAUUGGACAUCAAC -68
Get sequence
|