MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-219-P5

Family name MIR-219 (all species)
Seed GAUUGUC
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-219-P6 
Orthologues Aae-Mir-219  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Cgi-Mir-219  Cin-Mir-219  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Isc-Mir-219  Lan-Mir-219  Obi-Mir-219  Ovu-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Sko-Mir-219  Spu-Mir-219  Tca-Mir-219  Xbo-Mir-219 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)
FYBX02010268.1: 1198023-1198090 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCAGAGCAUGCAUUCGACUCUCCGCUGUUGAUUGUCCAAACGCAAUUCUUGCCGGGCGUUUGUGCGCAGCGCAAGGGUUGUGCAUUGGACAUCAACAGCUGUGCGGUCACUGCGACCAAGAGUACC
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Structure
        10         20         30        40         50        60   
CGUCAGAGCAUGCAUUC-    CUCC-|        U      A-           CCGGGCGUU 
                  GACU     GCUGUUGAU GUCCAA  CGCAAUUCUUG         U
                  CUGG     CGACAACUA CAGGUU  GUGUUGGGAAC         G
CCAUGAGAACCAGCGUCA    CGUGU^        -      AC           GCGACGCGU 
      120       110       100         90        80        70
Deep sequencing
CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ebu-Mir-219-P5_5p (predicted)

mirBase accessionNone
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Ebu-Mir-219-P5_3p (predicted)

mirBase accessionNone
Sequence
45- AGGGUUGUGCAUUGGACAUCAAC -68
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