MirGeneDB 3.0

MirGeneDB ID

Spu-Mir-219

Family name

MIR-219 (all species)

Seed

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-219

Paralogues

Orthologues

Aae-Mir-219 Aca-Mir-219-P2 Aca-Mir-219-P3 Aga-Mir-219 Agr-Mir-219 Ami-Mir-219-P2 Ami-Mir-219-P3 Ava-Mir-219-P13 Ava-Mir-219-P14 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P2 Bta-Mir-219-P2-as Bta-Mir-219-P3 Cfa-Mir-219-P2 Cfa-Mir-219-P2-as Cfa-Mir-219-P3 Cin-Mir-219 Cja-Mir-219-P2 Cja-Mir-219-P3 Cli-Mir-219-P2 Cmi-Mir-219-P2 Cmi-Mir-219-P3 Cpi-Mir-219-P2 Cpi-Mir-219-P3 Cpo-Mir-219-P2 Cpo-Mir-219-P2-as Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P2 Dno-Mir-219-P2-as Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P2a Dre-Mir-219-P2b Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Ebu-Mir-219-P5 Ebu-Mir-219-P6 Eca-Mir-219-P2 Eca-Mir-219-P3 Efe-Mir-219-P7 Efe-Mir-219-P8 Efe-Mir-219-P9 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P2 Ete-Mir-219-P3 Gga-Mir-219-P2 Gja-Mir-219-P2 Gja-Mir-219-P3 Gmo-Mir-219-P2a Gmo-Mir-219-P3a Gmo-Mir-219-P3b Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P2 Hsa-Mir-219-P2-as Hsa-Mir-219-P3 Isc-Mir-219 Laf-Mir-219-P2 Laf-Mir-219-P3 Lan-Mir-219 Lch-Mir-219-P2 Lch-Mir-219-P3 Llo-Mir-219 Loc-Mir-219-P2 Lpo-Mir-219-P20 Lpo-Mir-219-P21 Lpo-Mir-219-P22 Lpo-Mir-219-P23 Lpo-Mir-219-P24 Mal-Mir-219-P2a Mal-Mir-219-P2b Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P2 Mdo-Mir-219-P3 Mgi-Mir-219 Mml-Mir-219-P2 Mml-Mir-219-P2-as Mml-Mir-219-P3 Mmr-Mir-219-P2 Mmr-Mir-219-P3 Mmu-Mir-219-P2 Mmu-Mir-219-P2-as Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mom-Mir-219 Mun-Mir-219-P2 Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Neu-Mir-219-P2 Neu-Mir-219-P3 Oan-Mir-219-P2 Obi-Mir-219 Ocu-Mir-219-P2 Ocu-Mir-219-P2-as Ocu-Mir-219-P3 Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P2 Pab-Mir-219-P2-as Pab-Mir-219-P3 Pau-Mir-219 Pbv-Mir-219-P2 Pbv-Mir-219-P3 Pca-Mir-219 Pcr-Mir-219 Pdu-Mir-219-P14a Pdu-Mir-219-P14b Pfl-Mir-219 Pma-Mir-219-o1 Pma-Mir-219-o2 Pmi-Mir-219 Pve-Mir-219 Rno-Mir-219-P2 Rno-Mir-219-P2-as Rno-Mir-219-P3 Rph-Mir-219 Sha-Mir-219-P2 Sha-Mir-219-P3 Sko-Mir-219 Sma-Mir-219 Sme-Mir-219-P10a Sme-Mir-219-P10b Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P2 Spt-Mir-219-P3 Sro-Mir-219 Sto-Mir-219-P2 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tgu-Mir-219-P2 Tni-Mir-219-P2a Tni-Mir-219-P2b Tni-Mir-219-P3a Tni-Mir-219-P3b Tur-Mir-219 War-Mir-219 Xbo-Mir-219 Xla-Mir-219-P2c Xla-Mir-219-P2d Xtr-Mir-219-P2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Spur_5.0)

AAGJ06000004.1: 25977850-25977910 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCGUAUUUUCCAUGCGAGUGUUCUCCGUUGAUUGUCCGAACGCAAUUCUUGUUGAAUUUCCUAGUCAAGAACUGUGUACGGACAUCAGUGGUUGAUACCGCUAGCACCUAGAAUAGAUC

Get precursor sequence

Structure

        10           20        30        40        50        60
CAUCGUAUUUUCCAUGC---|A     CU        U     A     A      UUGAAU 
                    G GUGUU  CCGUUGAU GUCCG ACGCA UUCUUG      U
                    C CAUAG  GGUGACUA CAGGC UGUGU AAGAAC      U
CUAGAUAAGAUCCACGAUCG^-     UU        -     A     C      UGAUCC 
 .       110        100        90         80        70

Deep sequencing

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Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

32	Bl	Eg	Ga	Ov	Pl	To	To

Mature sequence

Spu-Mir-219_5p

mirBase accession

Sequence

0- UGAUUGUCCGAACGCAAUUCUUG -23

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Co-mature sequence

Spu-Mir-219_3p

mirBase accession

Sequence

39- AGAACUGUGUACGGACAUCAGU -61

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