MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-219-P3

Family name MIR-219 (all species)
Seed GAUUGUC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-219a
Paralogues Ami-Mir-219-P2 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cgi-Mir-219  Cin-Mir-219  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dre-Mir-219-P3a  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Gmo-Mir-219-P3b  Hsa-Mir-219-P3  Isc-Mir-219  Lan-Mir-219  Lch-Mir-219-P3  Mal-Mir-219-P3a  Mal-Mir-219-P3b  Mdo-Mir-219-P3  Mml-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Obi-Mir-219  Ocu-Mir-219-P3  Ovu-Mir-219  Pbv-Mir-219-P3  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P3  Sha-Mir-219-P3  Sko-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tni-Mir-219-P3a  Tni-Mir-219-P3b  Xbo-Mir-219 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711269.1: 103736-103791 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CACGCCUCCUCAUAUGUGAGCGCCGGGUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUGCCCCAAGAAUUGAGUGUGGACGUCGGGAGCCGCCGUUCCCCACCGACGCCCGGCGGA
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Structure
        10          20        30        40        50        
CACGCCUCCUCAUAUGU--|    C   G       U     A  G         UGUC 
                   GAGCG CGG UCCUGAU GUCCA AC CAAUUCUUG    \
                   CUUGC GCC AGGGCUG CAGGU UG GUUAAGAAC    U
AGGCGGCCCGCAGCCACCC^    C   G       -     G  A         CCCG 
    110       100        90         80        70        60
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-219-P3_5p

mirBase accessionMIMAT0038248
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Ami-Mir-219-P3_3p

mirBase accessionMIMAT0038249
Sequence
34- AGAAUUGAGUGUGGACGUCGGG -56
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