MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-219-P3a

Family name MIR-219 (all species)
Seed GAUUGUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-219-2
Paralogues Tni-Mir-219-P2a  Tni-Mir-219-P2b  Tni-Mir-219-P3b 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cin-Mir-219  Cja-Mir-219-P3  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dre-Mir-219-P3a  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P3  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P3  Isc-Mir-219  Laf-Mir-219-P3  Lan-Mir-219  Lch-Mir-219-P3  Llo-Mir-219  Mal-Mir-219-P3a  Mdo-Mir-219-P3  Mgi-Mir-219  Mml-Mir-219-P3  Mmr-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mom-Mir-219  Mun-Mir-219-P3-v1  Mun-Mir-219-P3-v2  Neu-Mir-219-P3  Obi-Mir-219  Ocu-Mir-219-P3  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P3  Pau-Mir-219  Pbv-Mir-219-P3  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P3  Rph-Mir-219  Sha-Mir-219-P3  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sro-Mir-219  Sto-Mir-219-P3-v1  Sto-Mir-219-P3-v2  Tca-Mir-219  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 16276637-16276702 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCACAUCCAUGUCCCAGACGUUCGGAGCUGAUUGUCCAAACGCAAUUCUUGCGUCUGCCUUUGUGAAACCAGGAGUUGUGGAUGGACAUCACGCCCCUGACCUCUGACACUCAGCGAGGGAUCA
Get precursor sequence
Structure
        10          20        30         40        50        60  
GCGCACAUCCAUGUCCC--   C   C  A  -|   U     AA           CGUCUGCC 
                   AGA GUU GG GC UGAU GUCCA  CGCAAUUCUUG        U
                   UCU CAG CC CG ACUA CAGGU  GUGUUGAGGAC        U
ACUAGGGAGCGACUCACAG   C   U  C  C^   -     AG           CAAAGUGU 
    120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-219-P3a_5p
mirBase accessionMIMAT0002901
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
Star sequence

Tni-Mir-219-P3a_3p* (predicted)
mirBase accessionNone
Sequence 
43- GGAGUUGUGGAUGGACAUCACGC -66
Get sequence